ExampleDb - Example database
Description¶
A small example database subset from Laserson and Vigneault et al, 2014.
Usage¶
ExampleDb
Format¶
A data.frame with the following columns:
sequence_id
: Sequence identifiersequence_alignment
: IMGT-gapped observed sequence.germline_alignment
: IMGT-gapped germline sequence.germline_alignment_d_mask
: IMGT-gapped germline sequence with N, P and D regions masked.v_call
: V region allele assignments.v_call_genotyped
: TIgGER corrected V region allele assignment.d_call
: D region allele assignments.j_call
: J region allele assignments.junction
: Junction region sequence.junction_length
: Length of the junction region in nucleotides.np1_length
: Number of nucleotides between V and D segmentsnp2_length
: Number of nucleotides between D and J segmentssample_id
: Sample identifierc_call
: C region assignment.duplicate_count
: Copy number of the sequencelocus
: Locus of the receptor
References¶
- Laserson U and Vigneault F, et al. High-resolution antibody dynamics of vaccine-induced immune responses. Proc Natl Acad Sci USA. 2014 111:4928-33.