ExampleDb - Example database
A small example database subset from Laserson and Vigneault et al, 2014.
A data.frame with the following columns:
sequence_id: Sequence identifier
sequence_alignment: IMGT-gapped observed sequence.
germline_alignment: IMGT-gapped germline sequence.
germline_alignment_d_mask: IMGT-gapped germline sequence with N, P and D regions masked.
v_call: V region allele assignments.
v_call_genotyped: TIgGER corrected V region allele assignment.
d_call: D region allele assignments.
j_call: J region allele assignments.
junction: Junction region sequence.
junction_length: Length of the junction region in nucleotides.
- Laserson U and Vigneault F, et al. High-resolution antibody dynamics of vaccine-induced immune responses. Proc Natl Acad Sci USA. 2014 111:4928-33.