ClonalAnalysis-class - Output of the analyzeClones function
ClonalAnalysis contains output from the analyzeClones function.
It includes infromation to interpret clonal assignment performance.
- cut-off separating the inter (within) and intra (between) clonal distances.
- data.frame containing all inter and intra clonal distances.
- density plot of inter versus intra clonal distances. The threshold is shown with a horizental dashed-line.
- a numeric vector containing scale parameters used in spectral clustering process.
- histogram of neighborhoods. The threshold is shown with a vertical dashed-line.