ClonalAnalysis-class - Output of the analyzeClones function

Description

ClonalAnalysis contains output from the analyzeClones function. It includes infromation to interpret clonal assignment performance.

Slots

threshold
cut-off separating the inter (within) and intra (between) clonal distances.
inter_intra
data.frame containing all inter and intra clonal distances.
plot_inter_intra
density plot of inter versus intra clonal distances. The threshold is shown with a horizental dashed-line.
neighborhoods
a numeric vector containing scale parameters used in spectral clustering process.
plot_neighborhoods
histogram of neighborhoods. The threshold is shown with a vertical dashed-line.

See also

analyzeClones